Targeted capture in evolutionary and ecological genomics

MR Jones, JM Good - Molecular ecology, 2016 - Wiley Online Library
… affixed to an array and used to capture homologous sequences for … , targeted capture can
be used to anchor anonymous genetic … and detecting population-level signatures of selection), …

Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis

TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
anonymous DNA sequences has been accumulating in … as sequence variation within and
among species varies across taxa… of the genome to be captured, increasing the DNA sequence

Genomic signature of Fanconi anaemia DNA repair pathway deficiency in cancer

ALH Webster, MA Sanders, K Patel, R Dietrich… - Nature, 2022 - nature.com
DNA was captured on a Qiagen Genomic Tip column, washed, and eluted by gravity flow. …
any platform-specific bias, we ran this analysis on both WGS and genome-wide CNV array

Genetic and genomic monitoring with minimally invasive sampling methods

EL Carroll, MW Bruford, JA DeWoody… - Evolutionary …, 2018 - Wiley Online Library
use of custom biotin-tagged RNA baits to capture genomic … SNP array platforms have
proprietary software packages that … changes in DNA or RNA abundance or sequence change, …

Genotyping and sequencing technologies in population genetics and genomics

JA Holliday, EM Hallerman, DC Haak - Population genomics: Concepts …, 2019 - Springer
… In addition, AFLPs reflect anonymous restriction sites, which are … Screening sequence
variation in the mitochondrial control … all available platforms have moved toward solution capture, …

An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray

LA Salas, DC Koestler, RA Butler, HM Hansen… - Genome biology, 2018 - Springer
DNA methylation with the 850 K EPIC DNA methylation array … Subtle changes are better
captured using the new L-DMR … and 6 females, all anonymous healthy donors. The donors had …

Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences

C Manzoni, DA Kia, J Vandrovcova… - Briefings in …, 2018 - academic.oup.com
… that captures up to 1 kb per run; (ii) DNA-microarrays, based … to identify signature patterns,
such as DNA methylation, … and processing (eg different array or NGS platforms, differences in …

Extended kinship analysis of historical remains using SNP capture

EM Gorden, EM Greytak, K Sturk-Andreaggi… - Forensic Science …, 2022 - Elsevier
… Family reference samples were genotyped using a standard SNP microarray. … using
microarray platforms (ie high quality FRS). The first SNP capture panel contained 24,999 genomic

Next-generation characterization of the cancer cell line encyclopedia

M Ghandi, FW Huang, J Jané-Valbuena, GV Kryukov… - Nature, 2019 - nature.com
… expression and reverse-phase protein array data for 1,072 cell lines … of extracted signatures
to 30 COSMIC signatures, we … Therefore, we used an alternative approach to capture gene …

Integrative clinical genomics of metastatic cancer

DR Robinson, YM Wu, RJ Lonigro, P Vats, E Cobain… - Nature, 2017 - nature.com
… Next, we looked at transcriptional signatures associated with … capture libraries using a
linear model with shrinkage and … to RNA-seq and major microarray platforms, (2) are highly …